Package: biospear
Type: Package
Title: Biomarker Selection in Penalized Regression Models
Version: 1.0.2
Author: Nils Ternes [aut], Federico Rotolo [aut], Stefan Michiels [aut,
        cre]
Maintainer: Stefan Michiels <stefan.michiels@gustaveroussy.fr>
Depends: R (>= 2.10), pkgconfig
Description: Provides some tools for developing and validating
        prediction models, estimate expected survival of patients and
        visualize them graphically. Most of the implemented methods are
        based on penalized regressions such as: the lasso (Tibshirani R
        (1996)), the elastic net (Zou H et al. (2005)
        <doi:10.1111/j.1467-9868.2005.00503.x>), the adaptive lasso
        (Zou H (2006) <doi:10.1198/016214506000000735>), the stability
        selection (Meinshausen N et al. (2010)
        <doi:10.1111/j.1467-9868.2010.00740.x>), some extensions of the
        lasso (Ternes et al. (2016) <doi:10.1002/sim.6927>), some
        methods for the interaction setting (Ternes N et al. (2016)
        <doi:10.1002/bimj.201500234>), or others. A function generating
        simulated survival data set is also provided.
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: cobs, corpcor, devtools, glmnet, graphics, grplasso, MASS,
        Matrix, mboost, parallel, plsRcox, pROC, PRROC, RCurl, stats,
        survAUC, survival
NeedsCompilation: no
Packaged: 2026-07-16 06:35:00 UTC; root
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git libglpk-dev libglu1-mesa-dev make
        libharfbuzz-dev texlive libgit2-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev
        libgl1-mesa-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://stefanmichielsgr.r-universe.dev
Date/Publication: 2018-12-04 09:20:19 UTC
RemoteUrl: https://github.com/cran/biospear
RemoteRef: HEAD
RemoteSha: 45bd46eaa0e17d6f3be87c722d9b2a1c6a5b4d0f